lolC protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lolC

Lipoprotein-releasing system transmembrane protein lolC. (414 aa)

Predicted Functional Partners:

lolD

0.996

Lrub_0353

0.948

lolA

0.926

Lrub_0352

0.877

Lrub_2723

0.869

pal

0.807

bamA

0.779

lolB

0.774

Lrub_0670

0.701

tolQ

0.644

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_0352	Lrub_0353	Lrub_0352	Lrub_0353	ABC transporter permease.	ABC transporter ATP binding protein.	0.993
Lrub_0352	Lrub_2723	Lrub_0352	Lrub_2723	ABC transporter permease.	ABC transporter ATP-binding protein.	0.890
Lrub_0352	bamA	Lrub_0352	Lrub_0874	ABC transporter permease.	Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.415
Lrub_0352	lolA	Lrub_0352	Lrub_1126	ABC transporter permease.	Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.854
Lrub_0352	lolB	Lrub_0352	Lrub_1705	ABC transporter permease.	Molecular chaperone LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.	0.739
Lrub_0352	lolC	Lrub_0352	Lrub_0672	ABC transporter permease.	Lipoprotein-releasing system transmembrane protein lolC.	0.877
Lrub_0352	lolD	Lrub_0352	Lrub_0671	ABC transporter permease.	ABC transporter ATP binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.978
Lrub_0352	pal	Lrub_0352	Lrub_0268	ABC transporter permease.	Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.592
Lrub_0353	Lrub_0352	Lrub_0353	Lrub_0352	ABC transporter ATP binding protein.	ABC transporter permease.	0.993
Lrub_0353	Lrub_2723	Lrub_0353	Lrub_2723	ABC transporter ATP binding protein.	ABC transporter ATP-binding protein.	0.540
Lrub_0353	lolA	Lrub_0353	Lrub_1126	ABC transporter ATP binding protein.	Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.858
Lrub_0353	lolB	Lrub_0353	Lrub_1705	ABC transporter ATP binding protein.	Molecular chaperone LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.	0.660
Lrub_0353	lolC	Lrub_0353	Lrub_0672	ABC transporter ATP binding protein.	Lipoprotein-releasing system transmembrane protein lolC.	0.948
Lrub_0353	lolD	Lrub_0353	Lrub_0671	ABC transporter ATP binding protein.	ABC transporter ATP binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.743
Lrub_0670	lolC	Lrub_0670	Lrub_0672	Hypothetical protein.	Lipoprotein-releasing system transmembrane protein lolC.	0.701
Lrub_0670	lolD	Lrub_0670	Lrub_0671	Hypothetical protein.	ABC transporter ATP binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.701
Lrub_2723	Lrub_0352	Lrub_2723	Lrub_0352	ABC transporter ATP-binding protein.	ABC transporter permease.	0.890
Lrub_2723	Lrub_0353	Lrub_2723	Lrub_0353	ABC transporter ATP-binding protein.	ABC transporter ATP binding protein.	0.540
Lrub_2723	lolA	Lrub_2723	Lrub_1126	ABC transporter ATP-binding protein.	Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.626
Lrub_2723	lolC	Lrub_2723	Lrub_0672	ABC transporter ATP-binding protein.	Lipoprotein-releasing system transmembrane protein lolC.	0.869