Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0697Hypothetical protein; Part of the Type IV secretion system. Belongs to the GSP E family. (344 aa)    
Predicted Functional Partners:
lvhB_6
Vir protein.
 
  
 0.991
Lrub_0699
Hypothetical protein.
 
  
 0.980
Lrub_0698
Hypothetical protein.
 
  
 0.974
Lrub_0696
Hypothetical protein.
 
   
 0.964
Lrub_0701
Hypothetical protein.
 
     0.939
Lrub_0700
Hypothetical protein.
       0.870
lvhB_5
Vir protein B5.
    
 0.849
Lrub_0695
Hypothetical protein.
       0.810
lvrD
LvrD.
       0.805
Lrub_0694
Hypothetical protein.
       0.757
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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