STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0789Putative S-isoprenylcysteine methyltransferase. (221 aa)    
Predicted Functional Partners:
Lrub_0788
Hypothetical protein.
 
    0.952
Lrub_0790
Hypothetical protein.
       0.800
Lrub_0531
Hypothetical protein.
    
 0.706
Lrub_1237
Hypothetical protein.
    
 0.706
Lrub_1656
Rho GTPase (Miro-like).
    
 0.706
bioI
Biotin biosynthesis cytochrome P450.
    
  0.569
Lrub_2341
HAD-superfamily hydrolase.
   
 
  0.554
ribF
Riboflavin biosynthesis protein RibF (riboflavin kinase/FMN adenylyltransferase); Belongs to the ribF family.
     
 0.542
Lrub_0783
Hypothetical protein.
 
  
  0.539
htpX
M48 family peptidase; Belongs to the peptidase M48B family.
    
 0.535
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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