STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbC_1Polyhydroxyalkanoic synthase. (615 aa)    
Predicted Functional Partners:
Lrub_0136
Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.932
pta_1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
 
 
 0.899
pta_2
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
 
 
 0.896
Lrub_1715
Putative Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.755
Lrub_2592
Esterase.
  
     0.709
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.694
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.694
Lrub_1713
Acetyoacetyl CoA reductase.
  
 
  0.570
phaB2
Acetyoacetyl CoA reductase.
  
 
  0.546
Lrub_0903
Patatin-like phospholipase.
  
     0.498
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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