STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proAZinc metalloproteinase precursor; Extracellular zinc metalloprotease. (543 aa)    
Predicted Functional Partners:
wzm
ABC transporter of LPS O-antigen, Wzm.
  
   
 0.661
flaA
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.660
Lrub_2606
Cysteine protease.
  
     0.587
Lrub_2824
Chitinase.
  
  
 0.582
lasB
Virulence metalloprotease; Extracellular zinc metalloprotease.
  
  
 
0.522
Lrub_1611
Aminopeptidase.
 
  
 0.494
cpbD
Chitin-binding protein CbpD.
  
  
 0.481
Lrub_1694
Cysteine protease.
  
     0.473
Lrub_2009
Protein IcmE (DotG).
  
     0.441
Lrub_1702
Putative membrane protein YdgA-like protein.
  
     0.438
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.