Lrub_0840 protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lrub_0840

Phenol hydroxylase. (244 aa)

Predicted Functional Partners:

alf1

0.767

Lrub_0841

0.749

fadH

0.709

Lrub_0793

0.555

Lrub_1901

0.517

Lrub_2660

0.484

Lrub_0108

0.482

Lrub_1449

0.480

Lrub_2081

0.462

fadB

0.460

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_0108	Lrub_0793	Lrub_0108	Lrub_0793	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Oxidoreductase, FAD-binding protein.	0.892
Lrub_0108	Lrub_0840	Lrub_0108	Lrub_0840	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Phenol hydroxylase.	0.482
Lrub_0108	fadH	Lrub_0108	Lrub_2027	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	2,4-dienoyl-CoA reductase FadH1.	0.769
Lrub_0793	Lrub_0108	Lrub_0793	Lrub_0108	Oxidoreductase, FAD-binding protein.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.892
Lrub_0793	Lrub_0840	Lrub_0793	Lrub_0840	Oxidoreductase, FAD-binding protein.	Phenol hydroxylase.	0.555
Lrub_0793	Lrub_1449	Lrub_0793	Lrub_1449	Oxidoreductase, FAD-binding protein.	Hydrogenase subunit.	0.805
Lrub_0793	Lrub_1901	Lrub_0793	Lrub_1901	Oxidoreductase, FAD-binding protein.	Choline monooxygenase.	0.985
Lrub_0793	Lrub_2081	Lrub_0793	Lrub_2081	Oxidoreductase, FAD-binding protein.	Metal-sulfur cluster biosynthetic enzyme.	0.927
Lrub_0793	Lrub_2660	Lrub_0793	Lrub_2660	Oxidoreductase, FAD-binding protein.	Alkane monooxygenase.	0.937
Lrub_0793	fadB	Lrub_0793	Lrub_0019	Oxidoreductase, FAD-binding protein.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.890
Lrub_0793	fadH	Lrub_0793	Lrub_2027	Oxidoreductase, FAD-binding protein.	2,4-dienoyl-CoA reductase FadH1.	0.989
Lrub_0840	Lrub_0108	Lrub_0840	Lrub_0108	Phenol hydroxylase.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.482
Lrub_0840	Lrub_0793	Lrub_0840	Lrub_0793	Phenol hydroxylase.	Oxidoreductase, FAD-binding protein.	0.555
Lrub_0840	Lrub_0841	Lrub_0840	Lrub_0841	Phenol hydroxylase.	Protein IcmC (DotV)-like protein.	0.749
Lrub_0840	Lrub_1449	Lrub_0840	Lrub_1449	Phenol hydroxylase.	Hydrogenase subunit.	0.480
Lrub_0840	Lrub_1901	Lrub_0840	Lrub_1901	Phenol hydroxylase.	Choline monooxygenase.	0.517
Lrub_0840	Lrub_2081	Lrub_0840	Lrub_2081	Phenol hydroxylase.	Metal-sulfur cluster biosynthetic enzyme.	0.462
Lrub_0840	Lrub_2660	Lrub_0840	Lrub_2660	Phenol hydroxylase.	Alkane monooxygenase.	0.484
Lrub_0840	alf1	Lrub_0840	Lrub_0839	Phenol hydroxylase.	Fructose bisphosphate aldolase.	0.767
Lrub_0840	fadB	Lrub_0840	Lrub_0019	Phenol hydroxylase.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.460