STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpA_2Carboxy-terminal protease; Belongs to the peptidase S41A family. (438 aa)    
Predicted Functional Partners:
Lrub_0868
Peptidase, M23/M37 family.
  
    0.797
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
 
  0.630
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.610
gshA
Glutamate--cysteine ligase.
    
  0.596
Lrub_0834
Oxaloacetate decarboxylase subunit alpha.
   
    0.571
Lrub_0166
Sensory box histidine kinase/response regulator.
 
  
 0.539
pepN
Aminopeptidase.
    
 0.536
Lrub_0426
Hypothetical protein.
    
 0.504
Lrub_0873
Membrane associated zinc metalloprotease.
 
  
 0.504
mltD
Membrane bound lytic murein transglycosylase D.
 
   
 0.501
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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