STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0886GGDEF/EAL domain-containing sensory box protein. (379 aa)    
Predicted Functional Partners:
Lrub_0150
Regulatory protein (EAL domain).
   
 0.931
stuC_1
Sensor histidine kinase.
 
0.906
Lrub_0521
Regulatory protein (EAL domain).
 
 
  0.898
gacS/letS
Transmission sensor LetS.
 0.891
Lrub_2768
Signal transduction protein (EAL/GGDEF domain protein).
 
 
 0.887
Lrub_1768
Inner membrane protein/sensory box protein LssE.
 
0.873
Lrub_0189
GGDEF domain-containing sensory box protein.
 
0.865
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
 
0.865
Lrub_0131
Regulatory protein (GGDEF and EAL domains).
 
 0.852
Lrub_2049
GGDEF domain-containing sensory box protein.
 
0.845
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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