Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0887Hypothetical protein. (473 aa)    
Predicted Functional Partners:
stuC_1
Sensor histidine kinase.
  
 0.969
smc_4
Chromosome partition protein Smc.
  
 0.958
Lrub_0131
Regulatory protein (GGDEF and EAL domains).
   
 0.887
Lrub_0189
GGDEF domain-containing sensory box protein.
  
 0.835
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
  
 0.835
gacS/letS
Transmission sensor LetS.
  
 0.830
Lrub_0528
Glycosyltransferase, family 2.
 
  
 0.820
Lrub_0394
Sensor histidine kinase.
   
 0.815
Lrub_2068
Regulatory protein (GGDEF and EAL domains).
    
 0.795
Lrub_1872
Sensory box histidine kinase/response regulator.
   
 0.731
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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