STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0888Coiled-coil protein. (418 aa)    
Predicted Functional Partners:
Lrub_0887
Hypothetical protein.
       0.631
Lrub_0931
Serine metalloprotease; Belongs to the peptidase S8 family.
  
 
 0.596
comA
DNA uptake/competence protein ComA.
  
  
 0.527
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
    
 0.500
Lrub_0189
GGDEF domain-containing sensory box protein.
   
 
 0.485
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
   
 
 0.485
Lrub_0397
Intracellular protease, ThiJ/PfpI family.
    
  0.477
lasB
Virulence metalloprotease; Extracellular zinc metalloprotease.
    
 0.470
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
   0.457
Lrub_0886
GGDEF/EAL domain-containing sensory box protein.
  
    0.453
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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