STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cinA_1Competence damage inducible protein CinA. (368 aa)    
Predicted Functional Partners:
cinA_2
Competence-damage inducible protein CinA; Belongs to the CinA family.
  
 0.945
Lrub_0896
Mechanosensitive ion channel MscS.
       0.870
Lrub_0898
LicD family protein (phosphorylcholine metabolism).
 
     0.812
Lrub_0897
HAD-superfamily hydrolase.
       0.773
Lrub_0899
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
     0.772
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.738
dlpA
DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein).
 
      0.641
comA
DNA uptake/competence protein ComA.
      
 0.598
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
    
 0.581
Lrub_0901
Putative glutamate synthase subunit beta.
 
     0.565
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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