Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_0898LicD family protein (phosphorylcholine metabolism). (290 aa)    
Predicted Functional Partners:
Lrub_0977
Choline kinase.
    
 0.829
cinA_1
Competence damage inducible protein CinA.
 
     0.812
Lrub_0897
HAD-superfamily hydrolase.
       0.784
Lrub_0896
Mechanosensitive ion channel MscS.
       0.777
Lrub_0899
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.578
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.578
Lrub_2842
O-antigen biosynthesis protein.
    
  0.460
Lrub_0528
Glycosyltransferase, family 2.
    
  0.444
Lrub_2126
Choline kinase.
 
   
 0.414
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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