Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0917Hypothetical protein. (733 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase, Cu, Zn.
   
 0.960
Lrub_0918
Hypothetical protein.
  
 
 0.925
ppiB
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.832
Lrub_1872
Sensory box histidine kinase/response regulator.
     
 0.779
Lrub_2323
Cation transport ATPase.
 
 
0.778
cadA
Zinc, cobalt and lead efflux system.
 
 
0.775
copA1_2
Copper efflux ATPase.
 
 
0.768
copA_1
Copper transporting P-type ATPase.
 
 
0.767
copA1_1
Copper efflux ATPase.
 
 
0.767
argS
arginyl-tRNA synthetase.
       0.686
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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