STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1009Bacterial regulatory protein, luxR family. (275 aa)    
Predicted Functional Partners:
gacS/letS
Transmission sensor LetS.
     
 0.769
stuC_1
Sensor histidine kinase.
     
 0.684
Lrub_2068
Regulatory protein (GGDEF and EAL domains).
   
 
 0.669
Lrub_0436
LuxR family transcriptional regulator.
  
 0.601
Lrub_0810
Lipolytic enzyme / transcription regulator protein.
  
 0.601
Lrub_2047
Response regulator GacA.
  
 0.601
psuG
Indigoidine synthase A-like protein involved in pigment biosynthesis; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
    
  0.584
Lrub_0131
Regulatory protein (GGDEF and EAL domains).
     
 0.493
Lrub_0166
Sensory box histidine kinase/response regulator.
     
 0.493
Lrub_0132
Metallo-beta-lactamase L1 precursor.
    
 
 0.481
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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