Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Lrub_1038ABC dipeptide/oligopeptide/nickel transport, ATPase component; Belongs to the ABC transporter superfamily. (601 aa)    
Predicted Functional Partners:
Lrub_2266
Peptide ABC transporter permease.
 
 
 0.979
Lrub_2267
Peptide ABC transporter permease.
 
 0.979
Lrub_2265
Extracellular solute-binding protein.
 
 
 0.966
oxyR_1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.637
Lrub_1036
Major facilitator family transporter.
       0.435
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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