STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yueDSepiapterin reductase. (252 aa)    
Predicted Functional Partners:
yjeA
Endo-1,4-beta-xylanase.
   
  0.816
hutI
Imidazolonepropionase.
       0.800
Lrub_1056
Oligopeptide transporter.
       0.800
Lrub_0793
Oxidoreductase, FAD-binding protein.
   
 0.769
ptlF
1-deoxy-11-beta-hydroxypentalenate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.747
phaB2
Acetyoacetyl CoA reductase.
  
     0.742
Lrub_2479
enoyl-ACP reductase.
  
  
  0.742
Lrub_1713
Acetyoacetyl CoA reductase.
  
     0.736
phaB_2
Acetoacetyl CoA reductase.
  
     0.733
phaB_3
Acetoacetyl CoA reductase.
  
     0.732
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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