Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1105Periplasmic protein. (983 aa)    
Predicted Functional Partners:
Lrub_1106
Outer membrane protein.
 
 
 0.998
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.870
hemB_2
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.801
Lrub_1103
Hypothetical protein.
       0.728
Lrub_1275
Putative asmA protein.
  
   
 0.625
Lrub_2577
Coiled-coil protein.
  
     0.593
cinA_2
Competence-damage inducible protein CinA; Belongs to the CinA family.
       0.554
bamA
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
     
 0.523
Lrub_1108
Ankyrin repeat-containing protein.
       0.510
Lrub_2783
Hypothetical protein.
  
     0.501
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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