fliH protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fliH

Polar flagellar assembly protein FliH. (211 aa)

Predicted Functional Partners:

Lrub_1134

0.998

Lrub_1295

0.995

fliE

0.989

fliJ

0.989

fliG

0.988

fliF

0.986

fliD

0.968

flgK

0.967

Lrub_2137

0.961

Lrub_0104

0.959

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_0104	Lrub_1134	Lrub_0104	Lrub_1134	Putative flagellar hook-length control protein.	Nucleotide binding protein FliI.	0.934
Lrub_0104	Lrub_1295	Lrub_0104	Lrub_1295	Putative flagellar hook-length control protein.	Muramidase, peptidoglycan hydrolase FlgJ.	0.994
Lrub_0104	Lrub_2137	Lrub_0104	Lrub_2137	Putative flagellar hook-length control protein.	Flagellar protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.967
Lrub_0104	flgK	Lrub_0104	Lrub_1296	Putative flagellar hook-length control protein.	Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.	0.969
Lrub_0104	fliD	Lrub_0104	Lrub_0033	Putative flagellar hook-length control protein.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.950
Lrub_0104	fliE	Lrub_0104	Lrub_1130	Putative flagellar hook-length control protein.	Flagellar hook-basal body complex protein.	0.979
Lrub_0104	fliF	Lrub_0104	Lrub_1131	Putative flagellar hook-length control protein.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.975
Lrub_0104	fliG	Lrub_0104	Lrub_1132	Putative flagellar hook-length control protein.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.957
Lrub_0104	fliH	Lrub_0104	Lrub_1133	Putative flagellar hook-length control protein.	Polar flagellar assembly protein FliH.	0.959
Lrub_0104	fliJ	Lrub_0104	Lrub_1135	Putative flagellar hook-length control protein.	Flagellar protein FliJ.	0.938
Lrub_1134	Lrub_0104	Lrub_1134	Lrub_0104	Nucleotide binding protein FliI.	Putative flagellar hook-length control protein.	0.934
Lrub_1134	Lrub_1295	Lrub_1134	Lrub_1295	Nucleotide binding protein FliI.	Muramidase, peptidoglycan hydrolase FlgJ.	0.966
Lrub_1134	Lrub_2137	Lrub_1134	Lrub_2137	Nucleotide binding protein FliI.	Flagellar protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.985
Lrub_1134	flgK	Lrub_1134	Lrub_1296	Nucleotide binding protein FliI.	Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.	0.978
Lrub_1134	fliD	Lrub_1134	Lrub_0033	Nucleotide binding protein FliI.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.966
Lrub_1134	fliE	Lrub_1134	Lrub_1130	Nucleotide binding protein FliI.	Flagellar hook-basal body complex protein.	0.989
Lrub_1134	fliF	Lrub_1134	Lrub_1131	Nucleotide binding protein FliI.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.998
Lrub_1134	fliG	Lrub_1134	Lrub_1132	Nucleotide binding protein FliI.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.998
Lrub_1134	fliH	Lrub_1134	Lrub_1133	Nucleotide binding protein FliI.	Polar flagellar assembly protein FliH.	0.998
Lrub_1134	fliJ	Lrub_1134	Lrub_1135	Nucleotide binding protein FliI.	Flagellar protein FliJ.	0.998