Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilMTfp pilus assembly protein, ATPase PilM. (354 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 0.999
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.995
Lrub_1177
Type IV pilus biogenesis protein PilO.
 
 
 0.994
Lrub_1178
Type IV pilus biogenesis protein PilP.
 
  
 0.985
Lrub_1749
LysM domain-containing protein.
  
 
   0.891
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.864
pilE_1
Type-IV pilin.
 
   
 0.859
uptC
Type II secretion system protein.
  
  
 0.858
pilC
Pilus assembly protein PilC.
 
 
 
 0.857
pilB
Pilus assembly protein PilB.
 
 
 
 0.786
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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