STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1211Peptidase, M23/M37 family. (295 aa)    
Predicted Functional Partners:
Lrub_1210
AraC family transcriptional regulator.
       0.870
xseA
Exonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.864
Lrub_0868
Peptidase, M23/M37 family.
 
   
 0.765
Lrub_1313
Hypothetical protein.
  
   
 0.751
Lrub_1213
Agglutination protein.
       0.738
Lrub_1214
Periplasmic protein.
       0.738
Lrub_1215
Two component histidine kinase.
       0.738
amiB
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.609
mltD
Membrane bound lytic murein transglycosylase D.
 
  
 0.558
cphA
Cyanophycin synthetase.
    
 0.516
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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