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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1214Periplasmic protein. (232 aa)    
Predicted Functional Partners:
Lrub_1215
Two component histidine kinase.
 
 
 0.970
Lrub_1213
Agglutination protein.
 
   
 0.958
rtxA-2
Structural toxin protein RtxA.
 
     0.896
Lrub_0046
Toxin secretion ATP binding protein.
 
   
 0.777
lssD_1
Secretion system protein D.
 
   
 0.772
Lrub_1278
Hypothetical protein.
 
     0.765
lssD_2
Secretion system protein D.
 
   
 0.729
Lrub_0189
GGDEF domain-containing sensory box protein.
   
 
 0.637
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
   
 
 0.637
xseA
Exonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.590
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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