STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1244Short chain dehydrogenase. (199 aa)    
Predicted Functional Partners:
Lrub_0793
Oxidoreductase, FAD-binding protein.
   
 0.769
Lrub_1766
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
   
 0.676
Lrub_2418
Oxidoreductase.
  
 
 0.674
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.672
pta_1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.666
pta_2
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.666
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.643
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.642
fadH
2,4-dienoyl-CoA reductase FadH1.
    
 0.642
capD
Nucleoside-diphosphate sugar epimerase.
       0.620
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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