Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1245Amino acid (lysine) permease. (492 aa)    
Predicted Functional Partners:
Lrub_2621
Putative amino acid transporter.
  
  
  0.591
Lrub_0912
Amino acid transporter.
  
  
  0.521
Lrub_2699
Amino acid transporter PotE.
  
  
  0.510
Lrub_0637
Hypothetical protein.
  
     0.506
yhiP
POT family transporter peptide transport protein.
  
     0.485
Lrub_0063
Peptide transport protein, POT family.
  
     0.461
uup_2
ABC transporter ATP-binding protein Uup.
       0.447
Lrub_0015
Amino acid transporter PotE.
  
  
  0.433
Lrub_0446
POT family transporter protein proton/peptide symporter.
  
     0.418
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.