STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbJ_1Stress response protein; Belongs to the UPF0337 (CsbD) family. (64 aa)    
Predicted Functional Partners:
Lrub_1330
Transmembrane protein.
 
    0.960
Lrub_2545
Osmotically inducible protein Y.
 
    0.753
Lrub_2448
Osmotically inducible protein Y.
  
    0.715
Lrub_1070
Putative periplasmic or secreted lipoprotein.
 
    0.661
Lrub_0162
Bacterioferritin (cytochrome b1); Belongs to the Dps family.
  
    0.580
Lrub_2287
Protein with a Dodecin-like topology.
   
    0.541
Lrub_1416
OsmC-like protein.
   
  
 0.487
Lrub_2654
Hemolysin, lipoprotein.
  
    0.475
Lrub_2655
Conserved hypothetical protein; putative periplasmic or secreted lipoprotein.
  
    0.475
Lrub_1331
Hypothetical protein.
       0.463
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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