STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspDType II protein secretion LspD. (784 aa)    
Predicted Functional Partners:
Lrub_1270
General secretion pathway protein C.
  
 
 0.984
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.982
lspJ
Type II secretory pathway protein LspJ.
 
  
 0.951
lspG
Type II secretory pathway protein LspG.
  
 0.946
lspK
Type II secretory pathway protein LspK.
 
   
 0.939
lspF
Type II secretory pathway protein LspF.
 
  
 0.932
lspI
Type II secretory pathway protein LspI.
 
  
 0.923
Lrub_0010
General secretion pathway protein LspH.
 
  
 0.800
Lrub_2173
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.762
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
  
0.733
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.