Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lrub_1359Hypothetical protein. (419 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase.
  
 0.847
Lrub_1020
Acetyl/propionyl-CoA carboxylase, beta subunit.
  
 
 0.725
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.644
Lrub_0834
Oxaloacetate decarboxylase subunit alpha.
    
  0.529
Lrub_1358
Hypothetical protein.
       0.471
atpC_1
F-type H -transporting ATPase epsilon chain.
  
     0.458
Lrub_0800
ATP synthase protein I.
  
     0.423
Lrub_0815
Integrase; Belongs to the 'phage' integrase family.
  
     0.413
Lrub_1018
Acyl CoA carboxylase subunit alpha.
  
 
 0.406
Lrub_1672
Pyruvate carboxylase subunit A; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.406
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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