STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdaHHistone deacetylase-like amidohydrolase. (307 aa)    
Predicted Functional Partners:
Lrub_0648
SNF2/RAD54 family transporter domain-containing protein.
    
 0.928
yjeA
Endo-1,4-beta-xylanase.
    
 0.879
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
    
 0.859
Lrub_1024
Hypothetical protein.
    
 0.756
Lrub_0397
Intracellular protease, ThiJ/PfpI family.
    
  0.714
pdxB
Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
    
 0.658
udk
Uridine kinase.
    
  0.635
Lrub_1248
Hypothetical protein.
    
  0.635
iolCB
IolC/IolB transferase kinase protein.
  
   0.606
iolG_2
Myo-inositol-2-dehydrogenase.
  
    0.554
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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