Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lrub_1387 | Lrub_1388 | Lrub_1387 | Lrub_1388 | Glyoxalase/Bleomycin resistance family protein. | Capsule biosynthesis protein. | 0.527 |
Lrub_1387 | Lrub_1389 | Lrub_1387 | Lrub_1389 | Glyoxalase/Bleomycin resistance family protein. | Hypothetical protein. | 0.438 |
Lrub_1388 | Lrub_1387 | Lrub_1388 | Lrub_1387 | Capsule biosynthesis protein. | Glyoxalase/Bleomycin resistance family protein. | 0.527 |
Lrub_1388 | Lrub_1389 | Lrub_1388 | Lrub_1389 | Capsule biosynthesis protein. | Hypothetical protein. | 0.628 |
Lrub_1388 | Lrub_1390 | Lrub_1388 | Lrub_1390 | Capsule biosynthesis protein. | Transmembrane protein. | 0.465 |
Lrub_1388 | cphA | Lrub_1388 | Lrub_0392 | Capsule biosynthesis protein. | Cyanophycin synthetase. | 0.696 |
Lrub_1388 | ddl | Lrub_1388 | Lrub_1734 | Capsule biosynthesis protein. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.451 |
Lrub_1388 | murD | Lrub_1388 | Lrub_1730 | Capsule biosynthesis protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.404 |
Lrub_1388 | murE | Lrub_1388 | Lrub_1158 | Capsule biosynthesis protein. | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.587 |
Lrub_1388 | murF | Lrub_1388 | Lrub_1728 | Capsule biosynthesis protein. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.556 |
Lrub_1388 | sidB | Lrub_1388 | Lrub_1012 | Capsule biosynthesis protein. | Substrate of the Dot/Icm system. | 0.413 |
Lrub_1389 | Lrub_1387 | Lrub_1389 | Lrub_1387 | Hypothetical protein. | Glyoxalase/Bleomycin resistance family protein. | 0.438 |
Lrub_1389 | Lrub_1388 | Lrub_1389 | Lrub_1388 | Hypothetical protein. | Capsule biosynthesis protein. | 0.628 |
Lrub_1389 | Lrub_1390 | Lrub_1389 | Lrub_1390 | Hypothetical protein. | Transmembrane protein. | 0.563 |
Lrub_1390 | Lrub_1388 | Lrub_1390 | Lrub_1388 | Transmembrane protein. | Capsule biosynthesis protein. | 0.465 |
Lrub_1390 | Lrub_1389 | Lrub_1390 | Lrub_1389 | Transmembrane protein. | Hypothetical protein. | 0.563 |
cphA | Lrub_1388 | Lrub_0392 | Lrub_1388 | Cyanophycin synthetase. | Capsule biosynthesis protein. | 0.696 |
cphA | murD | Lrub_0392 | Lrub_1730 | Cyanophycin synthetase. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.991 |
cphA | murE | Lrub_0392 | Lrub_1158 | Cyanophycin synthetase. | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.435 |
cphA | murF | Lrub_0392 | Lrub_1728 | Cyanophycin synthetase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.989 |
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