STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1404Outer membrane efflux protein. (517 aa)    
Predicted Functional Partners:
Lrub_1405
RND multidrug efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.969
lmxF
RND multidrug efflux transporter MexF.
 0.958
mexF2
Putative multidrug-efflux system transmembrane protein.
 0.893
Lrub_0095
HlyD family transporter secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.835
Lrub_2192
Hemolysin D.
 
  0.686
acrB
Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.677
Lrub_2429
Integral membrane protein, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.605
Lrub_0932
Multidrug efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.600
Lrub_1044
Outer membrane protein TolC.
     
 0.598
Lrub_2384
Hemolysin D.
  
 0.550
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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