STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1415Kynurenine 3-monooxygenase. (401 aa)    
Predicted Functional Partners:
Lrub_1416
OsmC-like protein.
 
    0.790
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
   
  
 0.704
Lrub_0793
Oxidoreductase, FAD-binding protein.
     
 0.692
petC_2
Cytochrome b6-f complex iron-sulfur subunit.
   
 
 0.683
ispB_2
Octaprenyl diphosphate synthase IspB.
     
 0.651
Lrub_2370
FAD dependent oxidoreductase.
  
   
 0.618
bioI
Biotin biosynthesis cytochrome P450.
  
 0.587
Lrub_2045
Sterol desaturase-related protein.
   
 0.547
kynU
Kynureninase.
  
 
 0.507
pksG
Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG.
   
  
 0.493
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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