Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_1415Kynurenine 3-monooxygenase. (401 aa)    
Predicted Functional Partners:
Lrub_1416
OsmC-like protein.
 
     0.789
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
   
  
 0.617
Lrub_2370
FAD dependent oxidoreductase.
  
   
 0.614
kynU
Kynureninase.
  
 
 0.593
bioI
Biotin biosynthesis cytochrome P450.
  
 0.573
Lrub_0793
Oxidoreductase, FAD-binding protein.
     
 0.524
petC_2
Cytochrome b6-f complex iron-sulfur subunit.
   
 
 0.492
ubiG_1
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
  
 
  0.490
Lrub_2045
Sterol desaturase-related protein.
   
  0.459
Lrub_1299
6-hydroxynicotinate 3-monooxygenase precursor.
  
     0.428
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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