STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1416OsmC-like protein. (148 aa)    
Predicted Functional Partners:
Lrub_1415
Kynurenine 3-monooxygenase.
 
    0.790
Lrub_1088
DNA-binding protein; Belongs to the Dps family.
  
  
 0.651
Lrub_1872
Sensory box histidine kinase/response regulator.
   
  
 0.575
Lrub_2085
Recombinase B.
   
    0.567
smpA
tmRNA-binding small protein A.
   
  
 0.503
yjbJ_1
Stress response protein; Belongs to the UPF0337 (CsbD) family.
   
  
 0.487
yjbJ_2
Stress response protein; Belongs to the UPF0337 (CsbD) family.
   
  
 0.487
Lrub_1749
LysM domain-containing protein.
   
    0.483
Lrub_0397
Intracellular protease, ThiJ/PfpI family.
  
  
 0.479
Lrub_1614
Serine protein kinase.
   
    0.479
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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