STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1416OsmC-like protein. (148 aa)    
Predicted Functional Partners:
Lrub_1415
Kynurenine 3-monooxygenase.
 
     0.789
Lrub_1088
DNA-binding protein; Belongs to the Dps family.
  
  
 0.750
Lrub_1614
Serine protein kinase.
   
    0.585
smpA
tmRNA-binding small protein A.
   
  
 0.557
yjbJ_1
Stress response protein; Belongs to the UPF0337 (CsbD) family.
   
    0.554
yjbJ_2
Stress response protein; Belongs to the UPF0337 (CsbD) family.
   
    0.554
Lrub_1872
Sensory box histidine kinase/response regulator.
   
  
 0.515
Lrub_0397
Intracellular protease, ThiJ/PfpI family.
  
  
 0.485
Lrub_1749
LysM domain-containing protein.
   
    0.447
Lrub_1417
Hypothetical protein.
       0.437
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.