STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1451Sulfhydrogenase subunit delta. (263 aa)    
Predicted Functional Partners:
Lrub_1452
Coenzyme F420-reducing hydrogenase, alpha subunit.
 
 0.997
hydG
Hydrogenase/sulfur reductase gamma subunit.
 
 
 0.984
Lrub_1453
Hydrogenase expression/formation protein.
 
 
 0.982
Lrub_1449
Hydrogenase subunit.
 
  
 0.981
hypF
Hydrogenase maturation protein HypF.
 
  
 0.885
hypD
Hydrogenase expression/formation protein HypD; Belongs to the HypD family.
 
   
 0.878
hypE
Hydrogenase expression/formation protein HypE.
 
   
 0.877
nuoE
NADH dehydrogenase I chain E.
   
 0.874
hypC
Hydrogenase expression/formation protein HypC.
       0.851
fadH
2,4-dienoyl-CoA reductase FadH1.
   
  0.821
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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