Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1458PAP2 superfamily protein. (389 aa)    
Predicted Functional Partners:
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
     
 0.802
fixL
Sensor histidine kinase.
       0.777
ftsK
Cell division protein FtsK.
    
 
 0.660
Lrub_0931
Serine metalloprotease; Belongs to the peptidase S8 family.
   
 0.624
Lrub_1372
Hypothetical protein.
    
   0.584
lasB
Virulence metalloprotease; Extracellular zinc metalloprotease.
   
 0.531
ctpA_2
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
   0.460
Lrub_0352
ABC transporter permease.
  
     0.455
tesA
Esterase TesA precursor.
  
 
  0.449
Lrub_1456
Hypothetical protein.
       0.434
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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