STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1559ABC transporter. (712 aa)    
Predicted Functional Partners:
Lrub_1558
Hemolysin D.
 
 0.973
Lrub_1556
Hypothetical protein.
 
     0.895
Lrub_1557
Hypothetical protein.
       0.836
lssD_2
Secretion system protein D.
 
 0.646
Lrub_1555
Hypothetical protein.
       0.616
lssD_1
Secretion system protein D.
 
 0.615
Lrub_1953
Putative efflux pump membrane fusion protein.
 
  0.615
lssD_3
Secretion system protein D.
 
 0.574
Lrub_1044
Outer membrane protein TolC.
  
 
 0.538
msbA
ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
 
0.533
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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