STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1603Tubulin-tyrosine ligase family protein. (329 aa)    
Predicted Functional Partners:
ydcO
Inner membrane protein YdcO.
       0.800
Lrub_1300
Leucine-rich repeat protein substrate of the Dot/Icm secretion system.
  
     0.733
Lrub_1051
IcmL-like protein.
  
     0.652
sidB
Substrate of the Dot/Icm system.
  
     0.607
Lrub_2783
Hypothetical protein.
  
     0.598
ydcN
DNA-binding transcriptional regulator.
       0.582
Lrub_2570
Putative methyltransferase.
  
     0.580
Lrub_1744
Ankyrin repeat protein.
  
     0.578
Lrub_0856
Ankyrin repeat-containing protein.
  
     0.565
Lrub_0969
Ankyrin repeat domain-containing protein.
  
     0.545
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.