STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1614Serine protein kinase. (643 aa)    
Predicted Functional Partners:
Lrub_1613
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
 
  
 0.997
spo
SpoVR family protein.
 
  
 0.996
Lrub_1088
DNA-binding protein; Belongs to the Dps family.
   
    0.775
pepN
Aminopeptidase.
       0.710
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.707
wrbA_1
Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family.
   
    0.589
wrbA_2
Flavoprotein WrbA (Trp repressor binding protein).
   
    0.589
Lrub_0662
Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.588
Lrub_1416
OsmC-like protein.
   
    0.585
phoH
Phosphate starvation inducible protein PhnH.
   
    0.552
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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