STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1668phytanoyl-CoA dioxygenase. (281 aa)    
Predicted Functional Partners:
Lrub_1667
D-alanyl-D-alanine dipeptidase.
       0.598
lysAC
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.561
Lrub_1669
Integral membrane protein.
       0.527
Lrub_0641
Glutamate synthetase.
    
 0.524
Lrub_1665
Cytokinin oxidase.
  
 
  0.523
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.523
Lrub_1670
Hypothetical protein.
       0.486
Lrub_2118
Hypothetical protein.
  
     0.441
rlmCD
23S rRNA (uracil-C(5))-methyltransferase RlmCD.
  
     0.426
Lrub_1426
Thaumatin domain-containing protein.
  
     0.403
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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