phaB2 protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

phaB2

Acetyoacetyl CoA reductase. (248 aa)

Predicted Functional Partners:

Lrub_1713

0.968

fadB

0.888

yfcX

0.888

Lrub_1722

0.883

yfcY

0.876

atoB

0.876

Lrub_1304

0.876

Lrub_1715

0.859

Lrub_1013

0.839

yueD

0.742

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_1013	Lrub_1304	Lrub_1013	Lrub_1304	Acetoacetyl CoA synthetase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.871
Lrub_1013	Lrub_1713	Lrub_1013	Lrub_1713	Acetoacetyl CoA synthetase.	Acetyoacetyl CoA reductase.	0.839
Lrub_1013	atoB	Lrub_1013	Lrub_1022	Acetoacetyl CoA synthetase.	Acyl CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.942
Lrub_1013	fadB	Lrub_1013	Lrub_0019	Acetoacetyl CoA synthetase.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.918
Lrub_1013	phaB2	Lrub_1013	Lrub_1714	Acetoacetyl CoA synthetase.	Acetyoacetyl CoA reductase.	0.839
Lrub_1013	yfcX	Lrub_1013	Lrub_0623	Acetoacetyl CoA synthetase.	Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.908
Lrub_1013	yfcY	Lrub_1013	Lrub_0624	Acetoacetyl CoA synthetase.	beta-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.871
Lrub_1304	Lrub_1013	Lrub_1304	Lrub_1013	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Acetoacetyl CoA synthetase.	0.871
Lrub_1304	Lrub_1713	Lrub_1304	Lrub_1713	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyoacetyl CoA reductase.	0.876
Lrub_1304	atoB	Lrub_1304	Lrub_1022	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.881
Lrub_1304	fadB	Lrub_1304	Lrub_0019	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.998
Lrub_1304	phaB2	Lrub_1304	Lrub_1714	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyoacetyl CoA reductase.	0.876
Lrub_1304	yfcX	Lrub_1304	Lrub_0623	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.999
Lrub_1304	yfcY	Lrub_1304	Lrub_0624	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	beta-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.865
Lrub_1713	Lrub_1013	Lrub_1713	Lrub_1013	Acetyoacetyl CoA reductase.	Acetoacetyl CoA synthetase.	0.839
Lrub_1713	Lrub_1304	Lrub_1713	Lrub_1304	Acetyoacetyl CoA reductase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.876
Lrub_1713	Lrub_1715	Lrub_1713	Lrub_1715	Acetyoacetyl CoA reductase.	Putative Polyhydroxyalkanoate synthesis repressor PhaR.	0.829
Lrub_1713	Lrub_1722	Lrub_1713	Lrub_1722	Acetyoacetyl CoA reductase.	Poly-beta-hydroxybutyrate polymerase.	0.892
Lrub_1713	atoB	Lrub_1713	Lrub_1022	Acetyoacetyl CoA reductase.	Acyl CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.876
Lrub_1713	fadB	Lrub_1713	Lrub_0019	Acetyoacetyl CoA reductase.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.888