Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lrub_0512 | korA | Lrub_0512 | Lrub_1198 | Potassium efflux system KefA. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.495 |
| Lrub_0512 | polA | Lrub_0512 | Lrub_2797 | Potassium efflux system KefA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.952 |
| Lrub_0512 | recA | Lrub_0512 | Lrub_1111 | Potassium efflux system KefA. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.900 |
| Lrub_0512 | recQ | Lrub_0512 | Lrub_2290 | Potassium efflux system KefA. | ATP-dependent DNA helicase RecQ. | 0.972 |
| Lrub_0512 | topA | Lrub_0512 | Lrub_1746 | Potassium efflux system KefA. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.922 |
| Lrub_1777 | Lrub_2481 | Lrub_1777 | Lrub_2481 | Single strand DNA binding protein. | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.592 |
| Lrub_1777 | dprA | Lrub_1777 | Lrub_1748 | Single strand DNA binding protein. | DNA processing enzyme DprA. | 0.539 |
| Lrub_1777 | polA | Lrub_1777 | Lrub_2797 | Single strand DNA binding protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.613 |
| Lrub_1777 | recQ | Lrub_1777 | Lrub_2290 | Single strand DNA binding protein. | ATP-dependent DNA helicase RecQ. | 0.415 |
| Lrub_1777 | topA | Lrub_1777 | Lrub_1746 | Single strand DNA binding protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.985 |
| Lrub_2481 | Lrub_1777 | Lrub_2481 | Lrub_1777 | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Single strand DNA binding protein. | 0.592 |
| Lrub_2481 | dprA | Lrub_2481 | Lrub_1748 | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA processing enzyme DprA. | 0.583 |
| Lrub_2481 | polA | Lrub_2481 | Lrub_2797 | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.653 |
| Lrub_2481 | recQ | Lrub_2481 | Lrub_2290 | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | ATP-dependent DNA helicase RecQ. | 0.421 |
| Lrub_2481 | topA | Lrub_2481 | Lrub_1746 | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.985 |
| dprA | Lrub_1777 | Lrub_1748 | Lrub_1777 | DNA processing enzyme DprA. | Single strand DNA binding protein. | 0.539 |
| dprA | Lrub_2481 | Lrub_1748 | Lrub_2481 | DNA processing enzyme DprA. | Single strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.583 |
| dprA | recA | Lrub_1748 | Lrub_1111 | DNA processing enzyme DprA. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.560 |
| dprA | topA | Lrub_1748 | Lrub_1746 | DNA processing enzyme DprA. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.895 |
| korA | Lrub_0512 | Lrub_1198 | Lrub_0512 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Potassium efflux system KefA. | 0.495 |
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