STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idiIsopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (184 aa)    
Predicted Functional Partners:
pksG
Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG.
  
 
 0.986
Lrub_2340
Hypothetical protein.
  
 
 0.975
Lrub_1762
Mevalonate kinase.
  
 
 0.943
Lrub_0259
Hypothetical protein.
  
 
 0.883
Lrub_0272
Mevalonate kinase.
  
 
 0.883
Lrub_0482
Squalene and phytoene synthase.
  
 
 0.883
Lrub_2229
Hypothetical protein.
  
 
 0.883
ispB_2
Octaprenyl diphosphate synthase IspB.
  
 0.865
ispB_1
Octaprenyl diphosphate synthase IspB; Belongs to the FPP/GGPP synthase family.
  
 0.862
Lrub_0899
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.862
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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