STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1827Bile acid beta-glucosidase. (273 aa)    
Predicted Functional Partners:
rir1
Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 0.953
Lrub_1825
Hypothetical protein.
 
     0.948
Lrub_1829
Hypothetical protein.
 
     0.948
Lrub_1813
Membrane protein.
 
     0.946
Lrub_1814
Pilus retraction ATPase PilT.
 
     0.946
Lrub_1815
TraU protein.
 
     0.946
Lrub_1816
Type IV secretory protein VirB4 component.
 
     0.946
Lrub_1818
Exported membrane protein.
 
     0.946
Lrub_1819
Hypothetical protein.
 
     0.946
Lrub_1832
Protein LvrA.
 
     0.930
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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