Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_1850Muramoyltetrapeptide carboxypeptidase. (294 aa)    
Predicted Functional Partners:
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.549
dacB
D-alanyl-D-alanine carboxypeptidase.
 
   
 0.524
Lrub_0834
Oxaloacetate decarboxylase subunit alpha.
   
 
  0.508
Lrub_1849
N-acetyltransferase GCN5.
  
    0.459
Lrub_1851
Hypothetical protein.
       0.453
Lrub_1138
UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase.
 
   
 0.438
Lrub_1079
Methyltransferase, ubiE/COQ5 family.
       0.436
Lrub_1848
Hypothetical protein.
       0.428
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
       0.427
Lrub_2226
Beta lactamase induction signal transducer AmpG.
  
   
 0.412
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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