STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chiA1Chitinase A1 precursor; Belongs to the glycosyl hydrolase 18 family. (415 aa)    
Predicted Functional Partners:
Lrub_2824
Chitinase.
 
 0.895
chiA
Chitinase A precursor.
 
  
  0.803
cpbD
Chitin-binding protein CbpD.
  
  
 0.747
Lrub_2706
Chitinase.
  
  
 0.697
Lrub_0137
Hypothetical protein.
   
 0.612
celA
Endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.600
Lrub_1250
Glycosyl hydrolase.
  
  
 0.556
Lrub_1766
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
     
  0.492
kynU
Kynureninase.
  
    0.469
cyoE
Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
    
  0.412
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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