STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1862Tryptophan-rich sensory protein. (167 aa)    
Predicted Functional Partners:
Lrub_1861
Major facilitator family transporter transporter.
       0.777
Lrub_2807
Deoxyribodipyrimidine photolyase phrB; Belongs to the DNA photolyase family.
 
  
 0.521
Lrub_2084
NAD-dependent epimerase/dehydratase.
       0.475
Lrub_2808
Deoxyribodipyrimidine photolyase.
  
  
 0.454
Lrub_2688
Outer membrane component of multidrug efflux pump.
 
     0.446
Lrub_2689
Putative membrane fusion protein.
 
     0.430
Lrub_2690
Toxin secretion ABC transporter ATP-binding protein.
 
     0.418
Lrub_1860
Dot/Icm T4SS effector.
       0.411
atpH
ATP synthase F1 subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   0.406
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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