Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lrub_1915Putative transmembrane protein. (253 aa)    
Predicted Functional Partners:
Lrub_1914
Hypothetical protein.
 
     0.968
Lrub_1916
ABC transporter permease.
  
 0.946
ttg2D
Toluene tolerance protein Ttg2D.
 
 0.850
Lrub_0265
ABC transporter ATP binding protein.
  
 0.746
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
  
 0.746
Lrub_0267
Transport protein.
  
  0.742
Lrub_0264
ABC transporter permease.
  
 0.738
ttg2B
Toluene tolerance protein Ttg2B.
  
 0.738
Lrub_1232
Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).
  
 0.605
motB_2
Flagellar motor protein MotD.
   
   0.538
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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