Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lrub_1927 | pieE | Lrub_1927 | Lrub_1928 | MAPEG family protein. | Substrate of the Dot/Icm secretion system. | 0.540 |
| cobN | hemD | Lrub_2319 | Lrub_0355 | Aerobic cobaltochelatase subunit CobN. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.559 |
| cobN | pieE | Lrub_2319 | Lrub_1928 | Aerobic cobaltochelatase subunit CobN. | Substrate of the Dot/Icm secretion system. | 0.532 |
| dksA | pieE | Lrub_2037 | Lrub_1928 | DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | Substrate of the Dot/Icm secretion system. | 0.764 |
| hemD | cobN | Lrub_0355 | Lrub_2319 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Aerobic cobaltochelatase subunit CobN. | 0.559 |
| hemD | pieE | Lrub_0355 | Lrub_1928 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Substrate of the Dot/Icm secretion system. | 0.433 |
| hisIE | map | Lrub_0215 | Lrub_0253 | Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family. | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.954 |
| hisIE | pieE | Lrub_0215 | Lrub_1928 | Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family. | Substrate of the Dot/Icm secretion system. | 0.495 |
| hisIE | rpmE | Lrub_0215 | Lrub_0416 | Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.923 |
| map | hisIE | Lrub_0253 | Lrub_0215 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family. | 0.954 |
| map | pieE | Lrub_0253 | Lrub_1928 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Substrate of the Dot/Icm secretion system. | 0.786 |
| map | rpmB | Lrub_0253 | Lrub_0853 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.408 |
| map | rpmG | Lrub_0253 | Lrub_0852 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.438 |
| map | rpsN | Lrub_0253 | Lrub_2496 | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 30S ribosomal protein S14. | 0.994 |
| pieE | Lrub_1927 | Lrub_1928 | Lrub_1927 | Substrate of the Dot/Icm secretion system. | MAPEG family protein. | 0.540 |
| pieE | cobN | Lrub_1928 | Lrub_2319 | Substrate of the Dot/Icm secretion system. | Aerobic cobaltochelatase subunit CobN. | 0.532 |
| pieE | dksA | Lrub_1928 | Lrub_2037 | Substrate of the Dot/Icm secretion system. | DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | 0.764 |
| pieE | hemD | Lrub_1928 | Lrub_0355 | Substrate of the Dot/Icm secretion system. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.433 |
| pieE | hisIE | Lrub_1928 | Lrub_0215 | Substrate of the Dot/Icm secretion system. | Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family. | 0.495 |
| pieE | map | Lrub_1928 | Lrub_0253 | Substrate of the Dot/Icm secretion system. | Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.786 |
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