STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1934Transglutaminase. (663 aa)    
Predicted Functional Partners:
Lrub_1935
Transmembrane protein.
 
  
 0.966
Lrub_1936
Methanol dehydrogenase regulatory protein.
 
   
 0.947
Lrub_1749
LysM domain-containing protein.
  
     0.739
pilN
Tfp pilus assembly protein PilN.
  
     0.733
Lrub_1178
Type IV pilus biogenesis protein PilP.
  
     0.722
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
     0.705
Lrub_1177
Type IV pilus biogenesis protein PilO.
  
     0.703
pilM
Tfp pilus assembly protein, ATPase PilM.
  
     0.694
Lrub_0567
Type IV pre-pilin.
 
     0.679
pilE_1
Type-IV pilin.
  
     0.672
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.