Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1939Regulatory protein (GGDEF and EAL domains). (543 aa)    
Predicted Functional Partners:
Lrub_2753
Regulatory protein (GGDEF, PAS, PAC domains).
 
 0.887
Lrub_0189
GGDEF domain-containing sensory box protein.
 
0.834
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
 
0.833
Lrub_0168
Sensory box protein.
 
0.805
Lrub_0640
GGDEF domain-containing protein.
  
  0.798
Lrub_2768
Signal transduction protein (EAL/GGDEF domain protein).
  
 
  0.792
Lrub_0776
Diguanylate kinase.
  
 
   0.791
Lrub_2746
Regulatory protein (GGDEF, EAL, PAS and PAC domains).
 
 0.781
stuC_1
Sensor histidine kinase.
 
0.727
Lrub_1875
Sensor histidine kinase.
 
0.672
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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