STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1962Oxydoreductase. (232 aa)    
Predicted Functional Partners:
Lrub_1963
Deoxyribodipyrimidine photolyase-related protein.
 
     0.869
fabG_2
3-oxoacyl-ACP reductase.
  
     0.752
ptlF
1-deoxy-11-beta-hydroxypentalenate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.733
Lrub_0793
Oxidoreductase, FAD-binding protein.
  
 0.703
yueD
Sepiapterin reductase.
  
     0.688
Lrub_1961
Hypothetical protein.
       0.574
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.570
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.570
Lrub_2418
Oxidoreductase.
 
  
 0.568
Lrub_0570
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.564
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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