Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_1998IcmT protein. (86 aa)    
Predicted Functional Partners:
Lrub_1999
Protein IcmS.
     
 0.897
icmQ
IcmQ protein.
     
 0.734
Lrub_2003
Protein IcmO (DotL).
     
 0.669
icmP
IcmP protein.
     
 0.668
Lrub_1997
Hypothetical protein.
       0.570
Lrub_2000
Hypothetical protein.
       0.526
dotC
Defect in organelle trafficking lipoprotein DotC.
     
 0.464
Lrub_1996
Hypothetical protein.
       0.456
Lrub_0297
DotB.
     
 0.451
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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